The Project Warehouses is a property in Cottonmouth owned by The Project in Manhunt 2. The warehouses are used to store records on experiments that have taken place and the effects of these experiments. There is a guard room, parking, gas station, Trucking office and the main warehouse owned by Cortex Storage (Project Business) on the property. The warehouses are guard by the Cops, but when something bad happens, The Watchdogs show up. The Project Warehouses are located near the Train Yard, RSV Gas Station, Auto Shop and a highway.

During the events in Manhunt 2, Leo Kasper breaks into the warehouses and burns his and Daniel's files.