Levels in Manhunt 2 are called episodes. Episodes in Manhunt 2 follows the story of Daniel Lamb and Leo Kasper, these are in order:
- Awakening
- Ghosts
- Sexual Deviants
- Red Light
- Best Friends - Leo Kasper, flashback mission
- Safe House
- Bees Honey Pot
- Assassination - Leo Kasper, flashback mission
- Most Wanted
- Ritual Cleansing - Leo Kasper, flashback mission
- Origins
- Broadcast Interrupted
- Altered State
- Domestic Disturbance - Leo Kasper, flashback mission
- Personality Clash - Good Ending
- Release Therapy - Leo Kasper, Bad Ending and Bonus Scene